Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HPhage tail fibre protein. (617 aa)    
Predicted Functional Partners:
J
Phage baseplate assembly protein J.
 
  
 0.980
I
Phage tail protein.
 
  
 0.977
V
Phage tail spike protein.
 
  
 0.976
W
Phage baseplate assembly protein W.
 
  
 0.974
ROD_09061
Putative phage baseplate protein.
 
  
 0.922
ROD_09081
Putative phage tail spike protein.
 
  
 0.914
ROD_09161
Putative phage tail sheath protein.
 
  
 0.907
ROD_09091
Putative phage tail protein.
 
  
 0.903
X
Putative phage tail protein.
 
    0.900
fI
Phage tail sheath protein.
 
  
 0.899
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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