STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPhage scaffold protein; Note translational start site for scaffold protein Z is integral to gene I. (192 aa)    
Predicted Functional Partners:
T-3
Phage major head subunit.
  
  
 0.795
ROD_47251
Hypothetical prophage protein.
       0.643
ROD_47241
Putative prophage membrane protein.
       0.642
L-2
Phage tail sheath protein.
       0.642
ROD_47231
Hypothetical prophage protein.
       0.631
ROD_47261
Hypothetical prophage protein.
       0.631
M-2
Phage tail tube protein.
       0.626
ROD_47291
Hypothetical prophage protein.
       0.615
ROD_47341
Hypothetical prophage protein.
  
    0.437
T-4
Phage tail tape measure protein.
       0.422
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.