STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_48261Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
ROD_48251
Putative membrane protein.
     
 0.854
ROD_48271
Putative transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.829
hdfR
LysR-family transcriptional regulator (H-NS-dependent flhD regulator); Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.693
ROD_15171
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.640
ROD_15301
Hypothetical protein.
      
 0.618
ROD_48241
Conserved hypothetical protein.
      
 0.618
ROD_09131
Conserved hypothetical prophage protein.
      
 0.499
hokA
Small toxic membrane protein HokA.
      
 0.499
cbl
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.487
ROD_27591
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.438
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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