STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nleFT3SS effector protein NleF. (192 aa)    
Predicted Functional Partners:
nleH
Conserved hypothetical protein (fragment); HMMPfam hit to PF08410, Region of unknown function DUF1737, score 3.1e-22.
     
 0.829
ROD_48881
Hypothetical protein.
       0.628
nleE
T3SS effector protein NleE.
      
 0.595
espI
T3SS effector protein NleA/EspI.
      
 0.594
nleC
T3SS effector protein NleC.
      
 0.570
espJ
T3SS effector protein EspJ.
      
 0.550
cesT
T3SS chaperone CesT.
      
 0.542
nleB1
ISCro3 transposase (fragment); HMMPfam hit to PF01609, Transposase, IS4-like, score 2.1e-14.
      
 0.524
tir
Tir, translocated intimin receptor.
      
 0.418
espZ
T3SS effector protein EspZ.
      
 0.418
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.