STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_50291Putative exported protein. (239 aa)    
Predicted Functional Partners:
ROD_23891
Putative lipoprotein.
  
    0.799
ROD_42801
Putative protease.
  
  
 0.786
ROD_40371
Putative lipoprotein.
  
   
 0.785
ROD_13301
Putative membrane protein.
  
     0.774
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.773
dcrB
Putative lipoprotein.
  
     0.773
ROD_43551
Putative membrane protein.
  
     0.773
ROD_24211
Putative exported protein.
  
     0.772
ROD_01331
Conserved hypothetical protein.
  
     0.771
ROD_10931
Putative chaperone.
  
     0.771
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.