Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROD_14501 | ROD_16371 | ROD_14501 | ROD_16371 | Putative exported protein. | Putative exported protein. | 0.757 |
ROD_14501 | asmA | ROD_14501 | ROD_22001 | Putative exported protein. | Putative outer membrane assembly protein. | 0.733 |
ROD_14501 | ompF | ROD_14501 | ROD_09981 | Putative exported protein. | Outer membrane protein F; Belongs to the Gram-negative porin family. | 0.560 |
ROD_14501 | phoE | ROD_14501 | ROD_03361 | Putative exported protein. | Outer membrane pore protein E; Belongs to the Gram-negative porin family. | 0.470 |
ROD_14501 | rcsD | ROD_14501 | ROD_23491 | Putative exported protein. | Two-component system response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. | 0.767 |
ROD_14501 | rof | ROD_14501 | ROD_01971 | Putative exported protein. | Rho-binding antiterminator. | 0.738 |
ROD_14501 | slt | ROD_14501 | ROD_50791 | Putative exported protein. | Soluble lytic murein transglycosylase precursor. | 0.604 |
ROD_16371 | ROD_14501 | ROD_16371 | ROD_14501 | Putative exported protein. | Putative exported protein. | 0.757 |
ROD_16371 | asmA | ROD_16371 | ROD_22001 | Putative exported protein. | Putative outer membrane assembly protein. | 0.777 |
ROD_16371 | msbB | ROD_16371 | ROD_18961 | Putative exported protein. | Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | 0.518 |
ROD_16371 | ompF | ROD_16371 | ROD_09981 | Putative exported protein. | Outer membrane protein F; Belongs to the Gram-negative porin family. | 0.701 |
ROD_16371 | phoE | ROD_16371 | ROD_03361 | Putative exported protein. | Outer membrane pore protein E; Belongs to the Gram-negative porin family. | 0.676 |
ROD_16371 | rcsD | ROD_16371 | ROD_23491 | Putative exported protein. | Two-component system response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. | 0.779 |
ROD_16371 | rof | ROD_16371 | ROD_01971 | Putative exported protein. | Rho-binding antiterminator. | 0.766 |
ROD_16371 | slt | ROD_16371 | ROD_50791 | Putative exported protein. | Soluble lytic murein transglycosylase precursor. | 0.647 |
ROD_16371 | trpR | ROD_16371 | ROD_50801 | Putative exported protein. | Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region. | 0.481 |
asmA | ROD_14501 | ROD_22001 | ROD_14501 | Putative outer membrane assembly protein. | Putative exported protein. | 0.733 |
asmA | ROD_16371 | ROD_22001 | ROD_16371 | Putative outer membrane assembly protein. | Putative exported protein. | 0.777 |
asmA | mreC | ROD_22001 | ROD_45661 | Putative outer membrane assembly protein. | Rod shape-determining protein; Involved in formation and maintenance of cell shape. | 0.417 |
asmA | ompF | ROD_22001 | ROD_09981 | Putative outer membrane assembly protein. | Outer membrane protein F; Belongs to the Gram-negative porin family. | 0.745 |
page 1 of 4