STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKP63748.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)    
Predicted Functional Partners:
AKP65025.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
AKP64548.1
NRPS condensation (elongation) domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.607
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.583
AKP64869.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
AKP64081.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.541
AKP63749.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
AKP65069.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
ldh
Lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
       0.445
AKP64069.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.415
Your Current Organism:
Lactobacillus koreensis
NCBI taxonomy Id: 637971
Other names: DSM 27983, JCM 16448, KCTC 13530, L. koreensis, Lactobacillus koreensis Bui et al. 2011, strain DCY50
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