STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ49480.1ABC transporter, substrate-binding protein; COG: COG0803; Pfam: PF01297; InterPro: IPR006127. (301 aa)    
Predicted Functional Partners:
EEQ47874.1
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.994
EEQ48260.1
ABC transporter, ATP-binding protein; COG: COG1121; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.978
EEQ47875.1
ABC transporter, ATP-binding protein; COG: COG1121; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.973
EEQ48261.1
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.940
EEQ48262.1
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.934
rpsN
Ribosomal protein S14p/S29e; COG: COG0199; Pfam: PF00253; InterPro: IPR001209.
  
  
 0.676
rpmB
Ribosomal protein L28; COG: COG0227; Pfam: PF00830; InterPro: IPR001383; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.590
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.496
EEQ48660.1
ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.492
fbpC3
ABC transporter, ATP-binding protein; COG: COG3839; Pfam: PF00005,PF08402; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
    
  0.441
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.