STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ49341.1Hypothetical protein; COG: COG3254; Pfam: PF05336; InterPro: IPR008000. (105 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase; COG: COG1070; Pfam: PF00370; InterPro: IPR013449.
 
  
 0.973
iolF
Minor myo-inositol transporter IolF; Pfam: PF07690; InterPro: IPR011701.
 
   
 0.927
EEQ49340.1
Hypothetical protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.926
rhaD
Putative rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.912
EEQ49323.1
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR000577; Belongs to the FGGY kinase family.
 
  
 0.794
lyx
Carbohydrate kinase, FGGY family protein; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR000577.
  
  
 0.759
EEQ49339.1
Transcriptional regulator, DeoR family; COG: COG1349; Pfam: PF08220,PF00455; InterPro: IPR014036.
 
    0.666
EEQ49093.1
Arylsulfatase; Pfam: PF00884; InterPro: IPR001952.
  
    0.440
EEQ49092.1
Arylsulfatase; Pfam: PF00884; InterPro: IPR000917.
  
    0.439
EEQ48163.1
Arylsulfatase; Pfam: PF00884; InterPro: IPR001952.
  
    0.415
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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