STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ48938.1NMT1/THI5-like protein; Pfam: PF09084. (313 aa)    
Predicted Functional Partners:
EEQ49473.1
ABC transporter, permease protein; COG: COG0600; Pfam: PF00528; InterPro: IPR000515.
 
 
 0.984
tauB
ABC transporter, ATP-binding protein; COG: COG1116; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.970
cheV
CheW-like protein; Pfam: PF01584,PF00072; InterPro: IPR002545.
    
  0.846
speB
Agmatinase; COG: COG0010; Pfam: PF00491; InterPro: IPR005925; Belongs to the arginase family.
     
 0.797
EEQ48937.1
Hypothetical protein.
       0.790
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
       0.780
speA1
Orn/Lys/Arg decarboxylase, major domain protein; COG: COG1982; Pfam: PF01276,PF03711; InterPro: IPR000310.
       0.773
EEQ48936.1
Hypothetical protein.
       0.752
EEQ48935.1
Hypothetical protein.
       0.724
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.664
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.