STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ48664.1LysR substrate binding domain protein; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
EEQ48663.1
Hypothetical protein.
       0.773
EEQ47703.1
LysR substrate binding domain protein; COG: COG0583; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
  
     0.764
EEQ48665.1
Hypothetical protein.
       0.668
EEQ48481.1
Transcriptional regulator, LysR family; Pfam: PF00126,PF03466; InterPro: IPR011991; Belongs to the LysR transcriptional regulatory family.
  
     0.596
EEQ48737.1
Putative thioredoxin-disulfide reductase; COG: COG0492; Pfam: PF07992,PF00070; InterPro: IPR013027.
     
 0.532
EEQ48660.1
ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593.
  
    0.506
EEQ48661.1
Iron chelate uptake ABC transporter, FeCT family, permease protein; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.498
EEQ48662.1
Periplasmic binding protein; COG: COG0614; Pfam: PF01497; InterPro: IPR002491.
       0.498
glvC
PTS system maltose-specific EIICB component; COG: COG1263; Pfam: PF02378,PF00367,PF00358; InterPro: IPR010975.
      
 0.459
scrA
PTS system sucrose-specific IIBC component; COG: COG1263; Pfam: PF00358,PF00367,PF02378; InterPro: IPR010973.
      
 0.459
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.