STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYS1Saccharopine dehydrogenase; COG: COG1748; Pfam: PF03435; InterPro: IPR005097. (423 aa)    
Predicted Functional Partners:
nspC
Carboxynorspermidine decarboxylase; COG: COG0019; Pfam: PF00278; InterPro: IPR005730.
 
 
 0.976
EEQ48211.1
Hypothetical protein; COG: COG0019; Pfam: PF00278; InterPro: IPR000183.
  
 
 0.835
lysA
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein; COG: COG0019; Pfam: PF02784; InterPro: IPR000183.
  
 
 0.835
speB
Agmatinase; COG: COG0010; Pfam: PF00491; InterPro: IPR005925; Belongs to the arginase family.
   
 0.755
EEQ49263.1
Aldehyde dehydrogenase (NAD) family protein; COG: COG1012; Pfam: PF00171; InterPro: IPR015590.
  
 
 0.661
EEQ48743.1
Methyl-accepting chemotaxis protein signaling domain protein; COG: COG0840; Pfam: PF00672,PF00015; InterPro: IPR004089.
       0.613
agt3
Aminotransferase, class III; COG: COG0160; Pfam: PF00202; InterPro: IPR005814; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.588
nadE
NAD+ synthase; COG: COG0171; Pfam: PF02540; InterPro: IPR003694; Belongs to the NAD synthetase family.
  
 
  0.583
ald
Alanine dehydrogenase; COG: COG0686; Pfam: PF05222,PF01262; InterPro: IPR008141.
    
  0.581
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
  0.581
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.