STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ48567.1Radical SAM domain protein; Pfam: PF04055; InterPro: IPR007197. (336 aa)    
Predicted Functional Partners:
EEQ48568.1
Radical SAM domain protein; Pfam: PF04055; InterPro: IPR007197.
 
    
0.800
EEQ48569.1
Radical SAM domain protein; Pfam: PF04055; InterPro: IPR007197.
 
    
0.797
EEQ48571.1
Glycosyltransferase, group 2 family protein; Pfam: PF00535; InterPro: IPR001173.
 
     0.786
EEQ48565.1
Methyltransferase, FkbM family; InterPro: IPR006342.
 
     0.772
EEQ48566.1
Hypothetical protein.
  
    0.764
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.764
EEQ48570.1
Methyltransferase, FkbM family; InterPro: IPR006342.
 
     0.714
EEQ48562.1
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
 
    0.697
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
     
 0.582
EEQ48561.1
NAD dependent epimerase/dehydratase family protein; Pfam: PF01370; InterPro: IPR016040.
 
     0.559
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.