Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEQ48542.1 | EEQ48543.1 | HMPREF0908_1129 | HMPREF0908_1130 | Hypothetical protein. | Ribosomal protein L7Ae; Pfam: PF01248. | 0.994 |
EEQ48542.1 | EEQ48544.1 | HMPREF0908_1129 | HMPREF0908_1131 | Hypothetical protein. | Hypothetical protein; Pfam: PF04296; InterPro: IPR007393. | 0.951 |
EEQ48542.1 | nusA | HMPREF0908_1129 | HMPREF0908_1132 | Hypothetical protein. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.961 |
EEQ48542.1 | rbfA | HMPREF0908_1129 | HMPREF0908_1127 | Hypothetical protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.880 |
EEQ48542.1 | rimP | HMPREF0908_1129 | HMPREF0908_1133 | Hypothetical protein. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.944 |
EEQ48542.1 | rpsB | HMPREF0908_1129 | HMPREF0908_0615 | Hypothetical protein. | Ribosomal protein S2; COG: COG0052; Pfam: PF00318; InterPro: IPR005706; Belongs to the universal ribosomal protein uS2 family. | 0.985 |
EEQ48542.1 | rpsJ | HMPREF0908_1129 | HMPREF0908_2056 | Hypothetical protein. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.964 |
EEQ48542.1 | rpsL | HMPREF0908_1129 | HMPREF0908_2060 | Hypothetical protein. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.952 |
EEQ48542.1 | rpsP | HMPREF0908_1129 | HMPREF0908_0049 | Hypothetical protein. | Ribosomal protein S16; COG: COG0228; Pfam: PF00886; InterPro: IPR000307; Belongs to the bacterial ribosomal protein bS16 family. | 0.955 |
EEQ48543.1 | EEQ48542.1 | HMPREF0908_1130 | HMPREF0908_1129 | Ribosomal protein L7Ae; Pfam: PF01248. | Hypothetical protein. | 0.994 |
EEQ48543.1 | EEQ48544.1 | HMPREF0908_1130 | HMPREF0908_1131 | Ribosomal protein L7Ae; Pfam: PF01248. | Hypothetical protein; Pfam: PF04296; InterPro: IPR007393. | 0.982 |
EEQ48543.1 | ksgA | HMPREF0908_1130 | HMPREF0908_1959 | Ribosomal protein L7Ae; Pfam: PF01248. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.800 |
EEQ48543.1 | nusA | HMPREF0908_1130 | HMPREF0908_1132 | Ribosomal protein L7Ae; Pfam: PF01248. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.978 |
EEQ48543.1 | rbfA | HMPREF0908_1130 | HMPREF0908_1127 | Ribosomal protein L7Ae; Pfam: PF01248. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.431 |
EEQ48543.1 | rimP | HMPREF0908_1130 | HMPREF0908_1133 | Ribosomal protein L7Ae; Pfam: PF01248. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.971 |
EEQ48543.1 | rpsB | HMPREF0908_1130 | HMPREF0908_0615 | Ribosomal protein L7Ae; Pfam: PF01248. | Ribosomal protein S2; COG: COG0052; Pfam: PF00318; InterPro: IPR005706; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
EEQ48543.1 | rpsJ | HMPREF0908_1130 | HMPREF0908_2056 | Ribosomal protein L7Ae; Pfam: PF01248. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.998 |
EEQ48543.1 | rpsL | HMPREF0908_1130 | HMPREF0908_2060 | Ribosomal protein L7Ae; Pfam: PF01248. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
EEQ48544.1 | EEQ48542.1 | HMPREF0908_1131 | HMPREF0908_1129 | Hypothetical protein; Pfam: PF04296; InterPro: IPR007393. | Hypothetical protein. | 0.951 |
EEQ48544.1 | EEQ48543.1 | HMPREF0908_1131 | HMPREF0908_1130 | Hypothetical protein; Pfam: PF04296; InterPro: IPR007393. | Ribosomal protein L7Ae; Pfam: PF01248. | 0.982 |
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