Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEQ48034.1 | EEQ48037.1 | HMPREF0908_1580 | HMPREF0908_1583 | Hypothetical protein. | Hypothetical protein. | 0.757 |
EEQ48034.1 | EEQ48038.1 | HMPREF0908_1580 | HMPREF0908_1584 | Hypothetical protein. | Putative flagellar hook-associated protein FlgL. | 0.657 |
EEQ48034.1 | EEQ48042.1 | HMPREF0908_1580 | HMPREF0908_1588 | Hypothetical protein. | Hypothetical protein. | 0.483 |
EEQ48034.1 | csrA | HMPREF0908_1580 | HMPREF0908_1581 | Hypothetical protein. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.773 |
EEQ48034.1 | flaG | HMPREF0908_1580 | HMPREF0908_1579 | Hypothetical protein. | FlaG protein; Pfam: PF03646; InterPro: IPR005186. | 0.773 |
EEQ48034.1 | flgK | HMPREF0908_1580 | HMPREF0908_1585 | Hypothetical protein. | Flagellar hook-associated protein FlgK; COG: COG1256; Pfam: PF06429; InterPro: IPR002371. | 0.639 |
EEQ48034.1 | fliD-2 | HMPREF0908_1580 | HMPREF0908_1578 | Hypothetical protein. | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.727 |
EEQ48034.1 | fliS | HMPREF0908_1580 | HMPREF0908_1577 | Hypothetical protein. | Flagellar protein FliS; COG: COG1516; Pfam: PF02561; InterPro: IPR003713. | 0.672 |
EEQ48034.1 | fliW | HMPREF0908_1580 | HMPREF0908_1582 | Hypothetical protein. | Protein FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.773 |
EEQ48037.1 | EEQ48034.1 | HMPREF0908_1583 | HMPREF0908_1580 | Hypothetical protein. | Hypothetical protein. | 0.757 |
EEQ48037.1 | EEQ48038.1 | HMPREF0908_1583 | HMPREF0908_1584 | Hypothetical protein. | Putative flagellar hook-associated protein FlgL. | 0.828 |
EEQ48037.1 | EEQ48042.1 | HMPREF0908_1583 | HMPREF0908_1588 | Hypothetical protein. | Hypothetical protein. | 0.710 |
EEQ48037.1 | csrA | HMPREF0908_1583 | HMPREF0908_1581 | Hypothetical protein. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.838 |
EEQ48037.1 | flaG | HMPREF0908_1583 | HMPREF0908_1579 | Hypothetical protein. | FlaG protein; Pfam: PF03646; InterPro: IPR005186. | 0.814 |
EEQ48037.1 | flgK | HMPREF0908_1583 | HMPREF0908_1585 | Hypothetical protein. | Flagellar hook-associated protein FlgK; COG: COG1256; Pfam: PF06429; InterPro: IPR002371. | 0.811 |
EEQ48037.1 | fliD-2 | HMPREF0908_1583 | HMPREF0908_1578 | Hypothetical protein. | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.807 |
EEQ48037.1 | fliS | HMPREF0908_1583 | HMPREF0908_1577 | Hypothetical protein. | Flagellar protein FliS; COG: COG1516; Pfam: PF02561; InterPro: IPR003713. | 0.771 |
EEQ48037.1 | fliW | HMPREF0908_1583 | HMPREF0908_1582 | Hypothetical protein. | Protein FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.892 |
EEQ48038.1 | EEQ48034.1 | HMPREF0908_1584 | HMPREF0908_1580 | Putative flagellar hook-associated protein FlgL. | Hypothetical protein. | 0.657 |
EEQ48038.1 | EEQ48037.1 | HMPREF0908_1584 | HMPREF0908_1583 | Putative flagellar hook-associated protein FlgL. | Hypothetical protein. | 0.828 |
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