STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ48117.1Putative DNA repair protein RadC; COG: COG2003; Pfam: PF04002; InterPro: IPR001405; Belongs to the UPF0758 family. (225 aa)    
Predicted Functional Partners:
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.965
EEQ48323.1
comF family protein; Pfam: PF00156.
 
    0.807
EEQ48116.1
Universal stress family protein; COG: COG0589; Pfam: PF00582; InterPro: IPR014729.
       0.732
mutL
DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.659
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 0.634
EEQ47967.1
Molybdopterin binding domain protein; COG: COG1058; Pfam: PF00994; InterPro: IPR001453.
     
 0.625
EEQ49117.1
DEAD/DEAH box helicase; COG: COG0514; Pfam: PF00270,PF00271; InterPro: IPR004589.
     
 0.623
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
   
 0.618
EEQ48115.1
Putative dGTPase; COG: COG0232; Pfam: PF01966; InterPro: IPR003607; Belongs to the dGTPase family. Type 2 subfamily.
  
    0.603
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
   
 0.552
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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