STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEQ47942.1Transcriptional regulator, GntR family; Pfam: PF00392; InterPro: IPR011991. (92 aa)    
Predicted Functional Partners:
EEQ48015.1
FCD domain protein; Pfam: PF07729; InterPro: IPR011711.
 
     0.876
EEQ47943.1
TRAP transporter solute receptor, DctP family; COG: COG1638; Pfam: PF03480; InterPro: IPR004682.
 
     0.542
EEQ49654.1
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.518
EEQ47944.1
TRAP transporter, DctQ-like membrane protein; COG: COG3090; Pfam: PF04290; InterPro: IPR007387.
 
     0.463
EEQ47945.1
TRAP transporter, DctM subunit; COG: COG1593; Pfam: PF06808; InterPro: IPR010656.
 
     0.437
EEQ49163.1
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729.
  
  
 0.414
EEQ47947.1
Hypothetical protein.
  
  
 0.414
EEQ49263.1
Aldehyde dehydrogenase (NAD) family protein; COG: COG1012; Pfam: PF00171; InterPro: IPR015590.
    
 0.411
Your Current Organism:
Selenomonas flueggei
NCBI taxonomy Id: 638302
Other names: S. flueggei ATCC 43531, Selenomonas flueggei ATCC 43531, Selenomonas flueggei str. ATCC 43531, Selenomonas flueggei strain ATCC 43531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.