STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Thal_0814PFAM: ATP dependent DNA ligase; KEGG: noc:Noc_1413 ATP-dependent DNA ligase. (365 aa)    
Predicted Functional Partners:
Thal_0813
Protein of unknown function UPF0278; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.806
Thal_1307
PFAM: protein of unknown function DUF6 transmembrane; KEGG: yen:YE2965 hypothetical protein.
  
     0.651
Thal_0566
PFAM: 17 kDa surface antigen; KEGG: hch:HCH_02788 hypothetical protein.
  
     0.571
Thal_0463
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nis:NIS_0033 sulfur oxidation protein, Rieske- I iron sulfur protein SoxL.
  
     0.569
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.568
Thal_0700
KEGG: nis:NIS_1760 hypothetical protein.
  
     0.524
rtcB
PFAM: protein of unknown function UPF0027; KEGG: pca:Pcar_0019 hypothetical protein; Belongs to the RtcB family.
      
 0.446
Thal_1473
PFAM: conserved hypothetical protein; KEGG: pae:PA4313 hypothetical protein.
  
     0.442
Thal_1454
PFAM: Protein of unknown function DUF2495; KEGG: afr:AFE_3115 hypothetical protein.
  
     0.429
Thal_0641
KEGG: hypothetical protein.
  
     0.424
Your Current Organism:
Thermocrinis albus
NCBI taxonomy Id: 638303
Other names: T. albus DSM 14484, Thermocrinis albus DSM 14484, Thermocrinis albus HI 11/12, Thermocrinis albus str. DSM 14484, Thermocrinis albus strain DSM 14484
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