STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Thal_1171TIGRFAM: RNA methyltransferase, TrmA family; KEGG: dps:DP1443 RNA-methyltransferase; PFAM: (Uracil-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (424 aa)    
Predicted Functional Partners:
rimP
Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
     0.851
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
       0.830
Thal_1175
TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: pca:Pcar_1972 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.
       0.788
Thal_1173
PFAM: protein of unknown function DUF214; KEGG: dds:Ddes_0613 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
  
 0.770
Thal_0025
Methyltransferase type 11; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
   
  
 0.765
Thal_1172
PFAM: type IV pilus assembly PilZ.
       0.757
Thal_1174
ABC transporter related protein; KEGG: prw:PsycPRwf_1739 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.757
Thal_0504
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     0.722
Thal_1163
PFAM: methyltransferase small; KEGG: gbm:Gbem_3437 methyltransferase small; Belongs to the methyltransferase superfamily.
  
    0.592
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
       0.580
Your Current Organism:
Thermocrinis albus
NCBI taxonomy Id: 638303
Other names: T. albus DSM 14484, Thermocrinis albus DSM 14484, Thermocrinis albus HI 11/12, Thermocrinis albus str. DSM 14484, Thermocrinis albus strain DSM 14484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.