STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Thal_1237PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2754 glycosyl transferase family 2. (324 aa)    
Predicted Functional Partners:
Thal_1238
KEGG: abu:Abu_2282 hypothetical protein.
       0.798
Thal_0230
PFAM: glycosyl transferase family 39; KEGG: glo:Glov_3271 glycosyl transferase family 39.
 
  
 0.730
Thal_1512
PFAM: glycosyl transferase family 39; KEGG: gbm:Gbem_2984 glycosyl transferase family 39.
 
  
 0.729
Thal_1236
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvm:DvMF_0108 transcriptional regulator, LysR family.
       0.697
Thal_0853
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: sec:SC2094 phosphomannomutase in colanic acid gene cluster; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II.
  
  
 0.573
Thal_1239
PFAM: protein of unknown function DUF52; KEGG: sfu:Sfum_0075 hypothetical protein.
       0.565
Thal_1240
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bgl:bglu_2p1060 major facilitator superfamily MFS_1.
       0.565
Thal_1241
PFAM: class II aldolase/adducin family protein; KEGG: sun:SUN_0631 hypothetical protein.
       0.565
Thal_0997
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: nad-dependent epimerase/dehydratase.
  
  
 0.423
Your Current Organism:
Thermocrinis albus
NCBI taxonomy Id: 638303
Other names: T. albus DSM 14484, Thermocrinis albus DSM 14484, Thermocrinis albus HI 11/12, Thermocrinis albus str. DSM 14484, Thermocrinis albus strain DSM 14484
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