STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC09384.1Methylmercaptopropionate CoA ligase. (539 aa)    
Predicted Functional Partners:
SDC39181.1
Hypothetical protein.
  
 
 0.916
SDE38022.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
   0.889
SDD24464.1
Acyl transferase domain-containing protein.
 
 0.845
SDD80717.1
Dimethylsulfoniopropionate demethylase; Belongs to the GcvT family.
     
 0.821
SDD24372.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
 
 0.820
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.777
SDD28017.1
acyl-CoA dehydrogenase.
  
 
  0.737
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.724
SDC05975.1
Acyl carrier protein.
  
 0.723
SDC03664.1
Thioesterase domain-containing protein.
 
 0.716
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.