STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC63586.1Core-2/I-Branching enzyme. (525 aa)    
Predicted Functional Partners:
SDC63543.1
Sulfotransferase family protein.
 
 
 0.946
SDD24372.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
 
 0.788
SDD66091.1
ABC-type polysaccharide/polyol phosphate export permease.
 
  
 0.782
SDD80056.1
Hypothetical protein.
  
 
   0.782
SDC95758.1
Hypothetical protein.
 
     0.778
SDD38710.1
Hypothetical protein.
  
     0.774
SDE05242.1
Hypothetical protein.
  
     0.774
SDD08112.1
Capsular polysaccharide transport system permease protein.
 
    0.772
SDD65899.1
Glycosyl transferase family 2.
 
     0.771
SDD13620.1
Hypothetical protein.
  
     0.769
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.