STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD09351.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
     
 0.707
SDE24508.1
Hypothetical protein.
  
     0.706
SDC66493.1
Beta-barrel assembly machine subunit BamF.
  
     0.673
SDC50007.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
     0.643
SDC50304.1
Membrane associated serine protease, rhomboid family.
  
     0.643
SDD08245.1
SseB protein N-terminal domain-containing protein.
  
     0.638
SDC51366.1
Exodeoxyribonuclease-5.
  
     0.619
SDC68773.1
Hypothetical protein.
  
     0.618
SDC89130.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.612
SDC69115.1
Hypothetical protein.
  
     0.571
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.