STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD43780.1Transcriptional regulator, AsnC family. (149 aa)    
Predicted Functional Partners:
SDD43831.1
Transcriptional regulator, AsnC family.
 
0.999
SDD43635.1
Cytochrome c55X.
 
    0.993
SDD43939.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
  
 0.993
SDD43890.1
Heme d1 biosynthesis radical SAM protein NirJ.
 
 
 0.990
SDD43681.1
Protein NirF.
 
  
 0.988
SDD43734.1
Transcriptional regulator, AsnC family.
 
 
0.975
SDD43542.1
Dissimilatory nitrite reductase (NO-forming), cytochrome cd1 type apoprotein.
 
  
 0.971
SDD43591.1
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
 
  0.911
SDD43355.1
Nitric oxide reductase, NorB subunit apoprotein; Belongs to the heme-copper respiratory oxidase family.
 
    0.867
SDD43395.1
Nitric oxide reductase, NorC subunit apoprotein.
 
    0.837
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.