STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD41703.1Arginine:pyruvate transaminase. (395 aa)    
Predicted Functional Partners:
SDD41759.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
 
  
  0.915
SDE32979.1
Glutamate synthase (NADPH) large subunit.
    
 0.911
SDD41655.1
Transcriptional regulator, TetR family.
 
     0.895
SDD41813.1
Dimethylargininase.
 
  
  0.888
SDD41561.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 
  0.841
SDD41451.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
     0.787
SDD41498.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
     0.766
SDD41609.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     0.710
SDD33228.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.696
gcvP
Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.688
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.