STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD57173.1Transcriptional regulator, RpiR family. (281 aa)    
Predicted Functional Partners:
SDD32351.1
2-keto-3-deoxy-phosphogluconate aldolase.
    
 0.645
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.641
SDD56974.1
D-aminopeptidase.
 
    0.641
SDD25112.1
Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.634
SDD57137.1
Spermidine/putrescine transport system substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
    0.614
SDD24926.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
  
 
 0.594
SDD78573.1
Transketolase; Belongs to the transketolase family.
     
 0.571
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
    
 0.566
SDD08031.1
Phosphomannomutase / phosphoglucomutase.
  
 
 0.544
SDC44627.1
Transcriptional regulator, RpiR family.
 
   
 0.526
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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