STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD70709.1Phytoene dehydrogenase-related protein. (549 aa)    
Predicted Functional Partners:
SDC10837.1
Phytoene/squalene synthetase.
  
 
 0.964
SDD70663.1
Phytoene dehydrogenase-related protein.
 
    
0.820
SDD70622.1
Aminomethyltransferase; Belongs to the GcvT family.
 
     0.813
SDD70752.1
Transcriptional regulator, TetR family.
 
  
  0.661
SDE31819.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.658
SDC68567.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.546
SDC69516.1
Sulfotransferase domain-containing protein.
 
  
 0.543
SDD85975.1
Predicted secreted hydrolase.
  
 
 0.543
SDE42756.1
Transcriptional regulator, TetR family.
  
  
  0.539
SDE43051.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
 
 0.512
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.