STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD77885.13-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (290 aa)    
Predicted Functional Partners:
SDD77922.1
Enoyl-CoA hydratase/carnithine racemase.
 
 0.987
SDD78198.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
 
 
  0.948
SDD77956.1
Hypothetical protein.
 
 
  0.890
SDC66302.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
  
 
  0.849
SDC66965.1
Aldehyde dehydrogenase (NAD+).
  
 
  0.849
SDE07297.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
  
 
  0.849
SDC39340.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.819
SDC36977.1
3-hydroxyisobutyrate dehydrogenase.
  
  
 
0.809
SDD45880.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 
 0.800
SDE39538.1
3-hydroxyisobutyrate dehydrogenase.
  
  
 
0.798
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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