STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE03209.1Uncharacterized conserved protein, Alpha-E superfamily. (314 aa)    
Predicted Functional Partners:
SDE03171.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
  
 0.996
SDE03283.1
Putative proteasome-type protease.
 
    0.967
SDE03252.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.962
SDD87073.1
Transglutaminase-like N-terminal region.
 
  
 0.809
SDD89517.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.807
SDD87205.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.686
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.481
SDD89625.1
Hypothetical protein.
 
  
 0.431
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.