STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE38645.1Enamidase. (388 aa)    
Predicted Functional Partners:
SDE38189.1
6-hydroxynicotinate reductase.
 
  
  0.968
SDE38269.1
Hypothetical protein.
 
     0.797
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.790
SDE38359.1
Amino acid synthesis.
 
     0.790
SDE38312.1
Amino acid synthesis.
 
     0.788
SDC79809.1
Amino acid synthesis.
 
     0.787
SDE38153.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
     0.749
hutH
Histidine ammonia-lyase.
  
  
 0.711
SDE38110.1
CO or xanthine dehydrogenase, FAD-binding subunit.
 
     0.694
SDE38605.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
       0.643
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.