STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE43844.1FHA domain protein. (438 aa)    
Predicted Functional Partners:
SDE43954.1
Type VI secretion system protein ImpK.
 
  
 0.972
SDE43879.1
Type VI secretion system protein VasD.
 
  
 0.968
SDE43774.1
Type VI secretion system protein ImpG.
 
  
 0.967
SDE43737.1
Type VI secretion system protein ImpF.
 
  
 0.966
SDE43808.1
Type VI secretion system protein ImpH.
 
  
 0.966
SDE43915.1
Type VI secretion system protein ImpJ.
 
  
 0.965
SDE43701.1
Type VI secretion system secreted protein Hcp.
 
  
 0.951
SDE43990.1
Type VI secretion system protein ImpL.
 
  
 0.950
SDE43629.1
Type VI secretion system protein ImpB.
 
  
 0.939
SDE43668.1
Type VI secretion system protein ImpC.
 
  
 0.939
Your Current Organism:
Ruegeria marina
NCBI taxonomy Id: 639004
Other names: CGMCC 1.9108, JCM 16262, R. marina, Ruegeria marina Huo et al. 2011, Ruegeria sp. ZH17, strain ZH17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.