Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAI81453.1DNA polymerase III, alpha subunit. (1160 aa)    
Predicted Functional Partners:
BAI80270.1
Hypothetical protein.
  
 0.983
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.981
dnaX
DNA polymerase III, gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
 0.975
BAI81327.1
Conserved hypothetical protein; C terminus of DNA polymerase III, epsilon subunit EC 2.7.7.7.
 
 
 0.969
BAI80104.1
Conserved hypothetical protein; C terminus of DNA polymerase III, epsilon subunit EC 2.7.7.7.
   
 0.968
BAI79637.1
Conserved hypothetical protein; C terminus of DNA polymerase III, epsilon subunit EC 2.7.7.7.
    
 0.916
BAI80364.1
DNA polymerase III, alpha subunit.
  
  
 
0.900
ssb
Single-strand DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.826
thiD
Phosphomethylpyrimidine kinase.
       0.799
BAI81452.1
Molybdopterin-guanine dinucleotide biosynthesis protein B.
       0.780
Your Current Organism:
Deferribacter desulfuricans
NCBI taxonomy Id: 639282
Other names: D. desulfuricans SSM1, Deferribacter desulfuricans SSM1, Deferribacter desulfuricans str. SSM1, Deferribacter desulfuricans strain SSM1
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