STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0006KEGG: hypothetical protein. (239 aa)    
Predicted Functional Partners:
Snov_0001
PFAM: helix-turn-helix domain protein; KEGG: bvi:Bcep1808_0172 helix-turn-helix domain-containing protein.
       0.773
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
       0.773
Snov_0003
KEGG: avi:Avi_6150 bacteriophage protein.
       0.773
Snov_0004
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bbt:BBta_6611 site-specific DNA-methyltransferase (adenine-specific); Belongs to the N(4)/N(6)-methyltransferase family.
       0.773
Snov_0005
KEGG: nha:Nham_2399 hypothetical protein.
       0.773
Snov_0007
KEGG: rsh:Rsph17029_3297 hypothetical protein.
       0.773
Snov_0008
KEGG: mno:Mnod_7350 hypothetical protein.
       0.773
Snov_0009
KEGG: rle:RL1123 hypothetical protein.
       0.752
Snov_0010
KEGG: rsq:Rsph17025_1748 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
       0.534
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.