STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0010KEGG: rsq:Rsph17025_1748 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease. (119 aa)    
Predicted Functional Partners:
Snov_0012
PFAM: Terminase; KEGG: rsq:Rsph17025_1750 phage terminase.
 
  
 0.931
Snov_0013
Phage portal protein, HK97 family; KEGG: bmj:BMULJ_04637 bacteriophage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
  
 0.890
Snov_2070
PFAM: Terminase; KEGG: rsp:RSP_2352 putative terminase large subunit / phage terminase.
 
  
 0.858
Snov_0007
KEGG: rsh:Rsph17029_3297 hypothetical protein.
 
  
 0.857
Snov_0014
PFAM: peptidase S14 ClpP; KEGG: dac:Daci_1633 peptidase S14 ClpP; Belongs to the peptidase S14 family.
 
    0.853
Snov_2069
KEGG: mpo:Mpop_5450 hypothetical protein; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: terminase small subunit putative P27.
 
    0.817
Snov_2058
KEGG: rpt:Rpal_3975 phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
  
 0.778
Snov_2063
KEGG: mes:Meso_1892 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
  
     0.774
Snov_0015
KEGG: bmj:BMULJ_04635 bacteriophage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
 
     0.745
Snov_1956
PFAM: major capsid protein HK97; KEGG: oca:OCAR_6143 phage capsid family.
 
     0.721
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.