STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0014PFAM: peptidase S14 ClpP; KEGG: dac:Daci_1633 peptidase S14 ClpP; Belongs to the peptidase S14 family. (293 aa)    
Predicted Functional Partners:
Snov_0013
Phage portal protein, HK97 family; KEGG: bmj:BMULJ_04637 bacteriophage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
  
 0.966
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
 
 
 0.949
Snov_0012
PFAM: Terminase; KEGG: rsq:Rsph17025_1750 phage terminase.
 
   
 0.937
Snov_0015
KEGG: bmj:BMULJ_04635 bacteriophage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
 
    0.908
clpB
ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
 
 0.870
Snov_1496
TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: azc:AZC_1595 AAA ATPase; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
  
 
 0.863
Snov_0010
KEGG: rsq:Rsph17025_1748 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
    0.853
Snov_2058
KEGG: rpt:Rpal_3975 phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
  
 0.837
Snov_0011
KEGG: rsq:Rsph17025_1749 hypothetical protein.
       0.786
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
   
  
 0.731
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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