STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0023KEGG: smd:Smed_1323 hypothetical protein. (188 aa)    
Predicted Functional Partners:
Snov_0022
KEGG: avi:Avi_1979 hypothetical protein.
       0.791
Snov_0024
TIGRFAM: phage tape measure protein; KEGG: avi:Avi_0873 methyl-accepting chemotaxis protein.
       0.777
Snov_0025
KEGG: smd:Smed_1878 hypothetical protein.
       0.773
Snov_0026
KEGG: rsp:RSP_2992 hypothetical protein.
       0.773
Snov_0027
KEGG: rsq:Rsph17025_2086 hypothetical protein.
       0.727
Snov_0028
KEGG: rsq:Rsph17025_2085 hypothetical protein.
       0.727
Snov_0029
KEGG: gvi:gll0645 hypothetical protein.
       0.727
Snov_0030
KEGG: smd:Smed_1872 hypothetical protein.
       0.717
Snov_0031
Hypothetical protein; KEGG: ach:Achl_0059 agmatine deiminase.
       0.666
Snov_0020
Phage protein, HK97 gp10 family; KEGG: avi:Avi_1977 hypothetical protein; TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein.
       0.615
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.