STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0053RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nwi:Nwi_2773 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)    
Predicted Functional Partners:
Snov_0051
KEGG: met:M446_2725 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver.
 
  
 0.892
Snov_0050
KEGG: rru:Rru_A0741 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein.
 
  
 0.833
Snov_0052
KEGG: rpe:RPE_1750 hypothetical protein.
   
 
 0.827
Snov_0048
PFAM: PRC-barrel domain protein; KEGG: atc:AGR_L_1375 hypothetical protein.
 
    0.625
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.594
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.573
Snov_0790
KEGG: rlg:Rleg_0772 signal transduction histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
   
 0.557
Snov_1869
PFAM: protein of unknown function UPF0118; KEGG: bja:bll1467 hypothetical protein.
 
     0.513
Snov_1987
PFAM: MCP methyltransferase CheR-type; Tetratricopeptide TPR_4; KEGG: pzu:PHZ_c0691 chemotaxis protein methyltransferase CheR; SMART: MCP methyltransferase CheR-type.
    
   0.512
Snov_0650
KEGG: pzu:PHZ_c0741 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver.
  
   
 0.445
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.