STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0067KEGG: xau:Xaut_1466 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Snov_0066
KEGG: rpe:RPE_0723 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
 
     0.818
Snov_0068
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: azc:AZC_0393 putative ATP dependent DNA ligase.
       0.794
Snov_0069
KEGG: xau:Xaut_1471 putative mRNA 3-end processing factor.
       0.793
Snov_2029
PFAM: Protein of unknown function DUF2327; KEGG: mes:Meso_1118 hypothetical protein.
  
     0.773
Snov_2587
KEGG: bja:blr2202 hypothetical protein.
  
     0.771
Snov_1410
KEGG: xau:Xaut_1636 hypothetical protein.
  
     0.768
Snov_3107
PFAM: protein of unknown function DUF1036; KEGG: azc:AZC_0444 hypothetical protein.
  
     0.768
Snov_3845
PFAM: protein of unknown function DUF1150; KEGG: azc:AZC_0347 hypothetical protein.
  
     0.768
Snov_1699
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_3868 invasion associated locus B family protein.
  
     0.762
Snov_0583
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.757
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.