STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0101PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH03508 hypothetical protein. (320 aa)    
Predicted Functional Partners:
Snov_2279
PFAM: protein of unknown function DUF1468; KEGG: xau:Xaut_1331 hypothetical protein.
 
    0.818
Snov_0189
PFAM: protein of unknown function DUF1468; KEGG: mms:mma_0471 small permease component of tripartite tricarboxylate transporter.
 
    0.817
Snov_2278
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
 
    0.816
Snov_1727
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
 
    0.812
Snov_4098
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rpa:RPA2320 TctA subunit of the tripartite tricarboxylate transport(TTT) family.
 
    0.811
Snov_0190
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
 
    0.809
Snov_4097
PFAM: protein of unknown function DUF1468; KEGG: har:HEAR0416 hypothetical protein.
 
    0.776
Snov_4338
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rhi:NGR_c25890 hypothetical protein.
 
    0.723
Snov_0902
PFAM: protein of unknown function DUF112 transmembrane; KEGG: mes:Meso_3315 hypothetical protein.
 
    0.722
Snov_0201
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ach:Achl_0355 protein of unknown function DUF112 transmembrane.
 
    0.676
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.