STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0119KEGG: xau:Xaut_1022 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (586 aa)    
Predicted Functional Partners:
Snov_0118
PFAM: dihydrodipicolinate synthetase; KEGG: xau:Xaut_1021 dihydrodipicolinate synthetase; Belongs to the DapA family.
 
 
 0.982
Snov_0117
PFAM: oxidoreductase domain protein; KEGG: bid:Bind_3077 galactose 1-dehydrogenase.
 
   
 0.817
Snov_0114
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bid:Bind_3075 SMP-30/gluconolaconase/LRE domain-containing protein.
 
     0.807
Snov_0116
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.781
Snov_2713
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.766
Snov_0120
GntR domain protein; KEGG: bra:BRADO1811 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
       0.765
Snov_0115
KEGG: atc:AGR_L_3190 putative dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
    
0.764
Snov_0121
PFAM: inner-membrane translocator; KEGG: bbt:BBta_2130 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
       0.764
Snov_0122
PFAM: inner-membrane translocator; KEGG: bja:blr3202 sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.758
Snov_0123
KEGG: bbt:BBta_2128 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.748
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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