STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0130KEGG: azc:AZC_3150 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Snov_4049
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xau:Xaut_0305 integral membrane sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
     0.762
Snov_4485
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: azc:AZC_4020 2'-deoxycytidine 5'-triphosphate deaminase.
 
     0.760
Snov_1846
PFAM: protein of unknown function DUF1467; KEGG: xau:Xaut_4616 hypothetical protein.
  
     0.710
Snov_2496
PFAM: protein of unknown function DUF1153; KEGG: met:M446_5121 hypothetical protein.
  
     0.707
Snov_0361
KEGG: azc:AZC_4070 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.706
Snov_3060
PFAM: protein of unknown function DUF1465; KEGG: nwi:Nwi_2748 hypothetical protein.
  
     0.705
Snov_4050
KEGG: azc:AZC_4693 transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver.
  
     0.705
Snov_2803
PFAM: HemY domain protein; KEGG: xau:Xaut_1161 HemY domain-containing protein.
  
     0.676
Snov_3944
SMART: metal-dependent phosphohydrolase HD region; KEGG: xau:Xaut_1475 metal dependent phosphohydrolase.
  
     0.671
Snov_1649
KEGG: msl:Msil_2113 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.669
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.