STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0143SH3 type 3 domain protein; KEGG: rle:RL3605 putative transmembrane protein; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein. (224 aa)    
Predicted Functional Partners:
Snov_2144
KEGG: oan:Oant_0052 SH3 type 3 domain-containing protein; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein.
  
     0.760
Snov_3168
PFAM: acyltransferase 3; KEGG: rsp:RSP_4209 acyltransferase.
  
     0.581
Snov_1790
PFAM: Transglycosylase-associated protein; KEGG: xau:Xaut_3895 transglycosylase-associated protein.
  
     0.546
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
   
    0.536
Snov_3585
PFAM: Transglycosylase-associated protein; KEGG: bmc:BAbS19_I09150 transglycosylase-associated protein.
  
     0.493
Snov_2695
KEGG: azc:AZC_0448 hypothetical protein.
  
     0.488
Snov_3469
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_2381 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.481
Snov_0034
PFAM: glycoside hydrolase family 24; KEGG: rlt:Rleg2_0751 glycoside hydrolase family 24.
 
     0.435
Snov_3119
PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein.
  
     0.426
Snov_0144
Putative signal transduction protein with CBS domains; KEGG: nha:Nham_1933 CBS domain-containing protein; PFAM: CBS domain containing protein; transport-associated; SMART: CBS domain containing protein.
       0.417
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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