Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Snov_0155 | Snov_0156 | Snov_0155 | Snov_0156 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | 0.987 |
| Snov_0155 | Snov_0157 | Snov_0155 | Snov_0157 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | 4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp, which would allow S.novella to grow on t4LHyp as a sole carbon source. | 0.506 |
| Snov_0155 | Snov_0158 | Snov_0155 | Snov_0158 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | PFAM: FAD dependent oxidoreductase; KEGG: bmc:BAbS19_I16830 TrkA potassium uptake protein. | 0.814 |
| Snov_0155 | Snov_0159 | Snov_0155 | Snov_0159 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | PFAM: dihydrodipicolinate synthetase; KEGG: mlo:mll3981 dihydrodipicolinate synthase; Belongs to the DapA family. | 0.739 |
| Snov_0155 | Snov_0161 | Snov_0155 | Snov_0161 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | KEGG: atc:AGR_L_403 probable permease of ABC transporter; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. | 0.454 |
| Snov_0155 | Snov_0162 | Snov_0155 | Snov_0162 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | KEGG: pap:PSPA7_4134 ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. | 0.477 |
| Snov_0155 | Snov_1660 | Snov_0155 | Snov_1660 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | KEGG: rpb:RPB_3648 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase. | 0.415 |
| Snov_0155 | Snov_2048 | Snov_0155 | Snov_2048 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | D-amino-acid dehydrogenase; KEGG: mes:Meso_1843 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase. | 0.611 |
| Snov_0155 | Snov_3449 | Snov_0155 | Snov_3449 | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | PFAM: TspO/MBR family protein; KEGG: xau:Xaut_2163 TspO and MBR like protein. | 0.478 |
| Snov_0156 | Snov_0155 | Snov_0156 | Snov_0155 | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | 0.987 |
| Snov_0156 | Snov_0157 | Snov_0156 | Snov_0157 | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | 4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp, which would allow S.novella to grow on t4LHyp as a sole carbon source. | 0.527 |
| Snov_0156 | Snov_0158 | Snov_0156 | Snov_0158 | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | PFAM: FAD dependent oxidoreductase; KEGG: bmc:BAbS19_I16830 TrkA potassium uptake protein. | 0.514 |
| Snov_0156 | Snov_0159 | Snov_0156 | Snov_0159 | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | PFAM: dihydrodipicolinate synthetase; KEGG: mlo:mll3981 dihydrodipicolinate synthase; Belongs to the DapA family. | 0.455 |
| Snov_0156 | Snov_0161 | Snov_0156 | Snov_0161 | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | KEGG: atc:AGR_L_403 probable permease of ABC transporter; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. | 0.473 |
| Snov_0156 | Snov_0162 | Snov_0156 | Snov_0162 | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | KEGG: pap:PSPA7_4134 ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. | 0.474 |
| Snov_0157 | Snov_0155 | Snov_0157 | Snov_0155 | 4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp, which would allow S.novella to grow on t4LHyp as a sole carbon source. | Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts t3LHyp to L-proline, which would allow S.novella to grow on t3LHyp as a sole carbon source. | 0.506 |
| Snov_0157 | Snov_0156 | Snov_0157 | Snov_0156 | 4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp, which would allow S.novella to grow on t4LHyp as a sole carbon source. | Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of cis-3-hydroxy-L-proline (c3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). May be involved in a degradation pathway that converts c3LHyp to L-proline, which would allow S.novella to grow on c3LHyp as a sole carbon source. | 0.527 |
| Snov_0157 | Snov_0158 | Snov_0157 | Snov_0158 | 4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp, which would allow S.novella to grow on t4LHyp as a sole carbon source. | PFAM: FAD dependent oxidoreductase; KEGG: bmc:BAbS19_I16830 TrkA potassium uptake protein. | 0.938 |
| Snov_0157 | Snov_0159 | Snov_0157 | Snov_0159 | 4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp, which would allow S.novella to grow on t4LHyp as a sole carbon source. | PFAM: dihydrodipicolinate synthetase; KEGG: mlo:mll3981 dihydrodipicolinate synthase; Belongs to the DapA family. | 0.879 |
| Snov_0157 | Snov_0161 | Snov_0157 | Snov_0161 | 4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). May be involved in a degradation pathway of t4LHyp, which would allow S.novella to grow on t4LHyp as a sole carbon source. | KEGG: atc:AGR_L_403 probable permease of ABC transporter; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. | 0.516 |
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