STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0168KEGG: azc:AZC_2752 hypothetical protein. (186 aa)    
Predicted Functional Partners:
Snov_0167
PFAM: ribosomal RNA adenine methylase transferase; KEGG: mes:Meso_0915 methyltransferase type 12.
       0.714
Snov_0164
KEGG: hypothetical protein.
       0.499
Snov_0165
Integral membrane sensor signal transduction histidine kinase; KEGG: ccs:CCNA_01239 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein.
       0.499
Snov_0166
Two component transcriptional regulator, winged helix family; KEGG: pzu:PHZ_c1903 response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain); PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
       0.499
Snov_0169
KEGG: ara:Arad_8431 isoprenylcysteine carboxyl methyltransferase protein.
       0.425
Snov_0170
KEGG: mva:Mvan_4730 hypothetical protein.
       0.425
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.