STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0185PFAM: oxidoreductase domain protein; KEGG: lin:lin2932 hypothetical protein. (361 aa)    
Predicted Functional Partners:
Snov_2266
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: azc:AZC_3959 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.741
Snov_0186
KEGG: bxe:Bxe_A4083 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH.
  
    0.721
Snov_1137
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: acr:Acry_0289 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.643
Snov_3560
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: rhi:NGR_c29470 putative endonuclease.
 
  
 0.598
Snov_0187
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ypg:YpAngola_A2081 oxidoreductase, NAD-binding.
 
    
0.578
Snov_0194
PFAM: Luciferase-like, subgroup; KEGG: jan:Jann_2939 luciferase-like.
 
     0.563
Snov_3218
KEGG: tmz:Tmz1t_1130 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.559
Snov_3579
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tle:Tlet_1696 xylose isomerase domain-containing protein.
  
  
 0.510
Snov_4028
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: xau:Xaut_2030 xylose isomerase domain-containing protein.
  
  
 0.510
Snov_0084
KEGG: azc:AZC_1833 dTDP-D-glucose-4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.506
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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