STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0188PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_2869 hypothetical protein. (332 aa)    
Predicted Functional Partners:
Snov_0190
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
    0.905
Snov_0189
PFAM: protein of unknown function DUF1468; KEGG: mms:mma_0471 small permease component of tripartite tricarboxylate transporter.
 
    0.888
Snov_2278
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
    0.822
Snov_4098
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rpa:RPA2320 TctA subunit of the tripartite tricarboxylate transport(TTT) family.
    0.822
Snov_1727
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
    0.821
Snov_0373
PFAM: protein of unknown function DUF112 transmembrane; KEGG: amt:Amet_1107 hypothetical protein.
    0.809
Snov_0201
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ach:Achl_0355 protein of unknown function DUF112 transmembrane.
    0.808
Snov_1596
PFAM: protein of unknown function DUF112 transmembrane; KEGG: jan:Jann_1159 hypothetical protein.
    0.802
Snov_1733
PFAM: protein of unknown function DUF112 transmembrane; KEGG: lsp:Bsph_1368 hypothetical protein.
    0.802
Snov_4338
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rhi:NGR_c25890 hypothetical protein.
    0.801
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.