STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0189PFAM: protein of unknown function DUF1468; KEGG: mms:mma_0471 small permease component of tripartite tricarboxylate transporter. (148 aa)    
Predicted Functional Partners:
Snov_0188
PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_2869 hypothetical protein.
 
    0.888
Snov_0190
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
 
    0.865
Snov_2280
PFAM: conserved hypothetical protein; KEGG: xau:Xaut_1330 hypothetical protein.
 
    0.820
Snov_0101
PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH03508 hypothetical protein.
 
    0.817
Snov_0102
PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH03508 hypothetical protein.
 
    0.816
Snov_1725
PFAM: conserved hypothetical protein; KEGG: aav:Aave_2588 hypothetical protein.
 
    0.780
Snov_3243
PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B0134 conserved hypothetical protein; putative exported protein, UPF0065.
 
    0.777
Snov_4096
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0060 hypothetical protein.
 
    0.676
Snov_2278
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
 
    0.554
Snov_1727
PFAM: protein of unknown function DUF112 transmembrane; KEGG: xau:Xaut_1332 hypothetical protein.
 
    0.477
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.