STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0192PFAM: Carboxymuconolactone decarboxylase; KEGG: bpy:Bphyt_5467 carboxymuconolactone decarboxylase. (181 aa)    
Predicted Functional Partners:
Snov_3865
PFAM: Carboxymuconolactone decarboxylase; KEGG: esa:ESA_00713 hypothetical protein.
    
 0.919
Snov_3526
PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A3531 hydrolase or acyltransferase-like protein.
  
 
 0.906
Snov_0227
PFAM: alpha/beta hydrolase fold; KEGG: jan:Jann_2938 alpha/beta hydrolase.
   
 
 0.901
Snov_3525
PFAM: alpha/beta hydrolase fold; KEGG: bpy:Bphyt_0479 alpha/beta hydrolase fold.
   
 
 0.901
Snov_0194
PFAM: Luciferase-like, subgroup; KEGG: jan:Jann_2939 luciferase-like.
 
    0.824
Snov_0193
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: jan:Jann_2956 oxidoreductase-like.
  
    0.775
Snov_0195
PFAM: flavin reductase domain protein FMN-binding; KEGG: nfa:nfa12490 putative oxygenase.
       0.628
Snov_0191
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_4360 LysR family transcriptional regulator.
   
 
 0.603
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
   
  
 0.601
Snov_0196
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: jan:Jann_2940 LysR family transcriptional regulator.
 
 
 
 0.541
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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