STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0215PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mno:Mnod_2985 binding-protein-dependent transport systems inner membrane component. (291 aa)    
Predicted Functional Partners:
Snov_0214
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.963
Snov_0632
PFAM: NMT1/THI5 like domain protein; KEGG: atc:AGR_L_3061 putative thiamine biosynthesis protein.
    0.892
Snov_0216
PFAM: NMT1/THI5 like domain protein; KEGG: dsh:Dshi_2543 NMT1/THI5-like domain-containing protein.
 
    0.769
Snov_4132
KEGG: bra:BRADO5374 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.757
Snov_0867
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pwa:Pecwa_1795 binding-protein-dependent transport systems inner membrane component.
 
     0.732
Snov_0222
ABC transporter related protein; KEGG: rci:RCIX444 putative ABC-type sulfonate import system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.699
Snov_2840
KEGG: mlo:mll1293 ATP-binding protein of ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.683
Snov_0868
KEGG: bvi:Bcep1808_4968 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.635
Snov_1049
KEGG: tmz:Tmz1t_2850 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.633
Snov_2379
KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.618
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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