STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0218PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2944 polysaccharide deacetylase. (304 aa)    
Predicted Functional Partners:
Snov_3384
KEGG: mpo:Mpop_3212 OHCU decarboxylase; TIGRFAM: OHCU decarboxylase; hydroxyisourate hydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Transthyretin.
 
  0.997
Snov_0282
PFAM: Asp/Glu/hydantoin racemase; KEGG: bja:blr5577 hydantoin racemase.
 
  
  0.934
Snov_1711
TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: bja:bll6147 allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
    
  0.901
Snov_0217
PFAM: amidohydrolase 2; KEGG: pat:Patl_0847 aminocarboxymuconate-semialdehyde decarboxylase.
       0.773
Snov_0216
PFAM: NMT1/THI5 like domain protein; KEGG: dsh:Dshi_2543 NMT1/THI5-like domain-containing protein.
       0.586
Snov_2921
PFAM: glycosyltransferase 36; putative carbohydrate binding; glycosyltransferase 36 associated; KEGG: acr:Acry_3139 glycosyltransferase 36.
  
  
 0.462
Snov_1808
PFAM: glycosyl transferase family 2; glycoside hydrolase family 17; KEGG: azc:AZC_1712 glycosyltransferase.
  
  
 0.421
Snov_0214
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.403
Snov_0215
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mno:Mnod_2985 binding-protein-dependent transport systems inner membrane component.
       0.403
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.